C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bone morphogenetic protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306385 BMP1-001 ENSG00000168487 9606 + 8:22164736-22212326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000306385
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000306385 3.015±0.00 1.173±0.00 4.848±0.00 0.733±0.00 2.210±0.00 3.963±0.00 0.738±0.00 6.760±1.25 18.871±8.71 1.134±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0008ZI CIL_0008ZI_0001 VISTA 8:21743578-22344815
CIL_000812 CIL_000812_0001 VISTA 8:21749915-22350771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 NAS skeletal system development
GO:0001502 TAS cartilage condensation
GO:0001503 IEA ossification
GO:0004222 TAS:IEA metalloendopeptidase activity
GO:0005125 IEA cytokine activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0005794 IEA Golgi apparatus
GO:0006508 IDA:IEA proteolysis
GO:0007275 TAS multicellular organismal development
GO:0008083 IEA growth factor activity
GO:0008233 IDA peptidase activity
GO:0008237 NAS:IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 IEA cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0031988 IEA membrane-bounded vesicle
GO:0042157 TAS lipoprotein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0061036 IDA positive regulation of cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022693 Bmp1-201 protein_coding Mus_musculus 0 3746
ENSDART00000127875 bmp1a-201 protein_coding Danio_rerio 0 1506
ENSMUST00000025986 Tll2-201 protein_coding Mus_musculus 0 1347
ENSDART00000059795 bmp1b-201 protein_coding Danio_rerio 0 957
ENSDART00000054472 tll1-001 protein_coding Danio_rerio 0 929
ENSMUST00000169941 Tll2-202 protein_coding Mus_musculus 0 379

Loading