C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 17 open reading frame 62
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306645 C17orf62-004 ENSG00000178927 9606 - 17:82442643-82450829 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyLiverOvaryPlacentaENST00000306645
Transcript ID Adrenal Heart Kidney Liver Ovary Placenta
ENST00000306645 51.889±0.00 5.596±0.00 11.062±0.00 15.956±0.00 36.829±4.42 17.064±6.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054N CIL_00054N_0001 CGP 17:82389223-82442645
CIL_00054K CIL_00054K_0001 CGP 17:82418318-82450829
CIL_00043T CIL_00043T_0002 CGP 17:82442589-82490537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038709 BC017643-001 protein_coding Mus_musculus 0 643
ENSMUST00000106115 BC017643-003 protein_coding Mus_musculus 0 643
ENSMUST00000137299 BC017643-004 protein_coding Mus_musculus 0 532
ENSMUST00000149351 BC017643-006 retained_intron Mus_musculus 0 521
ENSMUST00000147490 BC017643-002 protein_coding Mus_musculus 0 459
ENSMUST00000133535 BC017643-007 retained_intron Mus_musculus 0 370
ENSMUST00000169393 BC017643-008 protein_coding Mus_musculus 0 222
ENSMUST00000156214 BC017643-005 nonsense_mediated_decay Mus_musculus 8e-27 126

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