C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307972 FOXP4-002 ENSG00000137166 9606 + 6:41565749-41600626 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307972 6.381±0.00 4.408±0.00 1.015±0.00 2.664±2.52 8.301±6.63 15.280±0.00 4.411±0.00 7.979±0.00 6.053±0.00 7.832±7.28 5.829±0.00 13.681±8.10 5.808±1.86 18.359±11.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0001 VISTA 6:41112821-41713777
CIL_0007QG CIL_0007QG_0001 VISTA 6:41166717-41767957
CIL_0008IB CIL_0008IB_0001 VISTA 6:41169077-41770286
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_00028Z CIL_00028Z_0002 CGP 6:41546426-41654246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097311 Foxp4-002 protein_coding Mus_musculus 0 2569
ENSMUST00000113263 Foxp4-008 protein_coding Mus_musculus 0 2536
ENSMUST00000113262 Foxp4-003 protein_coding Mus_musculus 0 1384
ENSMUST00000113265 Foxp4-001 protein_coding Mus_musculus 0 1371
ENSMUST00000136314 Foxp4-005 processed_transcript Mus_musculus 0 867
ENSDART00000122918 foxp4-202 protein_coding Danio_rerio 0 255
ENSDART00000114288 foxp4-201 protein_coding Danio_rerio 0 255
ENSMUST00000154108 Foxp4-007 retained_intron Mus_musculus 0 239
ENSDART00000121544 foxp1a-201 protein_coding Danio_rerio 7e-25 121
ENSDART00000136509 foxp1a-003 processed_transcript Danio_rerio 7e-25 121
ENSDART00000146526 foxp1a-002 protein_coding Danio_rerio 9e-24 117
ENSDART00000104985 foxp1a-001 protein_coding Danio_rerio 9e-24 117
ENSDART00000129022 foxp1a-004 protein_coding Danio_rerio 9e-24 117

Loading