C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097311 Foxp4-002 ENSMUSG00000023991 10090 - 17:47867764-47924435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverMuscleOvaryPlacentaENSMUST00000097311
Transcript ID Bladder Brain Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000097311 2.353±0.44 4.489±0.00 6.254±0.00 6.111±0.29 1.088±0.07 0.425±0.17 6.040±0.38 9.629±4.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_00093V CIL_00093V_0002 VISTA 17:47614773-48215356
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0042803 IPI protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048617 IMP embryonic foregut morphogenesis
GO:0061140 IGI lung secretory cell differentiation
GO:1901249 IGI regulation of lung goblet cell differentiation
GO:1901250 IGI negative regulation of lung goblet cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060861 foxp2-201 protein_coding Danio_rerio 0 224
ENSDART00000134820 foxp2-008 protein_coding Danio_rerio 0 224
ENSDART00000142087 foxp2-007 protein_coding Danio_rerio 0 224
ENST00000307972 FOXP4-002 protein_coding Homo_sapiens 0 2569
ENST00000373057 FOXP4-003 protein_coding Homo_sapiens 0 2702
ENST00000373060 FOXP4-201 protein_coding Homo_sapiens 0 2736
ENST00000373063 FOXP4-001 protein_coding Homo_sapiens 0 2468
ENST00000409208 FOXP4-006 protein_coding Homo_sapiens 0 2486

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