C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cofilin 1 (non-muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308162 CFL1-201 ENSG00000172757 9606 - 11:65854837-65858333 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308162
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308162 362.303±0.00 459.879±0.00 175.828±132.72 132.631±114.99 150.696±110.83 111.402±104.80 160.311±137.23 133.635±107.61 385.056±374.57 53.356±44.76 413.365±40.44 698.763±198.38 185.939±45.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MN CIL_0002MN_0001 CGP 11:65823022-65862026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007010 IMP cytoskeleton organization
GO:0007266 TAS Rho protein signal transduction
GO:0007411 TAS axon guidance
GO:0007596 TAS blood coagulation
GO:0009615 IEP response to virus
GO:0016020 IDA membrane
GO:0022604 IMP regulation of cell morphogenesis
GO:0030036 TAS actin cytoskeleton organization
GO:0030042 IEA actin filament depolymerization
GO:0030168 TAS platelet activation
GO:0031982 IDA vesicle
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043066 TAS negative regulation of apoptotic process
GO:0045087 TAS innate immune response
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116560 Cfl1-201 protein_coding Mus_musculus 0 1387
ENSMUST00000065243 Gm6180-201 processed_pseudogene Mus_musculus 0 721
ENSMUST00000121310 Gm8682-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000118840 Gm14933-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000122234 Gm14108-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000118997 Gm15660-001 processed_pseudogene Mus_musculus 0 401

Loading