C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cofilin 1, non-muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116560 Cfl1-201 ENSMUSG00000056201 10090 + 19:5490485-5494029 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116560 359.996±23.72 342.430±48.06 415.449±9.71 716.463±112.77 397.963±141.19 368.526±47.28 85.236±9.89 251.538±12.04 349.975±221.22 331.767±58.76 29.769±7.59 456.634±27.12 634.105±263.85 137.973±34.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MN CIL_0002MN_0002 CGP 19:5490485-5510489

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0001755 IMP neural crest cell migration
GO:0001842 IMP neural fold formation
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005925 IEA focal adhesion
GO:0006468 IDA protein phosphorylation
GO:0006606 IEA protein import into nucleus
GO:0006928 IMP cellular component movement
GO:0007010 ISS cytoskeleton organization
GO:0007015 IMP actin filament organization
GO:0009615 IEA response to virus
GO:0016020 IEA membrane
GO:0022604 ISS regulation of cell morphogenesis
GO:0030010 IMP establishment of cell polarity
GO:0030027 IEA lamellipodium
GO:0030030 ISO cell projection organization
GO:0030042 IEA actin filament depolymerization
GO:0030836 IMP positive regulation of actin filament depolymerization
GO:0030864 IDA cortical actin cytoskeleton
GO:0031252 IEA cell leading edge
GO:0031982 IEA vesicle
GO:0043200 IDA response to amino acid
GO:0045792 ISO negative regulation of cell size
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006132 cfl1-001 protein_coding Danio_rerio 0 209
ENSDART00000144817 cfl1-002 processed_transcript Danio_rerio 0 198
ENST00000308162 CFL1-201 protein_coding Homo_sapiens 0 1387
ENST00000432948 CFL1P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 329
ENST00000438248 CFL1P1-002 processed_transcript Homo_sapiens 0 346
ENST00000440942 CFL1P3-001 processed_pseudogene Homo_sapiens 0 538
ENST00000440986 CFL1P2-001 processed_pseudogene Homo_sapiens 0 778
ENST00000451536 CFL1P4-001 processed_pseudogene Homo_sapiens 0 532
ENST00000508046 CFL1P5-001 processed_pseudogene Homo_sapiens 0 593
ENST00000513172 CCDC125-006 processed_transcript Homo_sapiens 0 279
ENST00000524553 CFL1-014 protein_coding Homo_sapiens 0 1081
ENST00000525451 CFL1-001 protein_coding Homo_sapiens 0 1404
ENST00000526975 CFL1-008 protein_coding Homo_sapiens 0 534
ENST00000527344 CFL1-013 protein_coding Homo_sapiens 0 1127
ENST00000530101 SNX32-008 retained_intron Homo_sapiens 5e-39 167
ENST00000530413 CFL1-015 protein_coding Homo_sapiens 0 616
ENST00000530945 CFL1-003 retained_intron Homo_sapiens 0 691
ENST00000531407 CFL1-002 protein_coding Homo_sapiens 0 1101
ENST00000531413 CFL1-007 protein_coding Homo_sapiens 0 804
ENST00000532134 CFL1-005 protein_coding Homo_sapiens 0 702
ENST00000534769 CFL1-006 protein_coding Homo_sapiens 0 833
ENST00000534784 CFL1-012 protein_coding Homo_sapiens 0 438
ENST00000621007 CCDC125-006 processed_transcript Homo_sapiens 0 279
ENST00000622370 CFL1P5-001 processed_pseudogene Homo_sapiens 0 593

Loading