C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 33
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308527 SNX33-001 ENSG00000173548 9606 + 15:75647906-75662301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308527 5.687±0.00 4.139±0.00 1.119±0.00 1.113±0.75 3.630±2.36 4.295±3.70 1.371±0.71 2.318±1.21 2.403±0.66 3.517±2.82 1.137±0.00 6.308±3.13 4.185±0.59 3.141±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AG CIL_0000AG_0002 CGP 15:75647906-75712848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0005515 IPI:IEA protein binding
GO:0005768 IBA endosome
GO:0005829 IDA cytosol
GO:0006886 IBA intracellular protein transport
GO:0006897 IMP endocytosis
GO:0007032 IMP endosome organization
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 IMP endosomal transport
GO:0017038 IDA protein import
GO:0019898 IDA extrinsic component of membrane
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0036089 IMP cleavage furrow formation
GO:0042802 IPI identical protein binding
GO:0044351 IMP macropinocytosis
GO:0045806 IDA negative regulation of endocytosis
GO:0051044 IDA positive regulation of membrane protein ectodomain proteolysis
GO:0097320 IDA membrane tubulation
GO:2000009 IDA negative regulation of protein localization to cell surface
GO:2000010 IDA positive regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050916 Snx33-201 protein_coding Mus_musculus 0 2357
ENSDART00000009971 snx33-002 protein_coding Danio_rerio 0 645
ENSDART00000132927 snx33-001 protein_coding Danio_rerio 3.00004e-41 176

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