C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, pyrin domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000312165 NLRP6-001 ENSG00000174885 9606 + 11:278570-285304 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungOvaryPlacentaTestisENST00000312165
Transcript ID Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000312165 0.051±0.00 0.019±0.00 0.112±0.08 0.213±0.00 0.226±0.00 0.147±0.03 0.110±0.04 0.248±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B4 CIL_0002B4_0001 CGP 11:278365-296107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005000 ISS vasopressin receptor activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007186 ISS G-protein coupled receptor signaling pathway
GO:0009617 IEA response to bacterium
GO:0010506 IEA regulation of autophagy
GO:0034122 IEA negative regulation of toll-like receptor signaling pathway
GO:0042060 IEA wound healing
GO:0043124 IEA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043409 IEA negative regulation of MAPK cascade
GO:0050727 ISS regulation of inflammatory response
GO:0050777 IEA negative regulation of immune response
GO:0070255 IEA regulation of mucus secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184560 Nlrp6-002 protein_coding Mus_musculus 0 1190
ENSMUST00000183845 Nlrp6-001 protein_coding Mus_musculus 0 1190
ENSMUST00000106045 Nlrp6-201 protein_coding Mus_musculus 0 1177
ENSMUST00000183761 Nlrp6-003 retained_intron Mus_musculus 0 414

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