C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GLIS family zinc finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000312233 GLIS1-001 ENSG00000174332 9606 - 1:53506237-53734204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000312233
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000312233 1.010±0.00 0.101±0.00 0.346±0.06 0.125±0.00 0.041±0.00 0.039±0.00 0.999±0.00 0.149±0.00 0.091±0.00 0.235±0.00 0.122±0.05 1.155±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0001 VISTA 1:53245555-53849135
CIL_0006WD CIL_0006WD_0002 CGP 1:53506237-53838860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106738 Glis1-002 protein_coding Mus_musculus 0 2026
ENSMUST00000046005 Glis1-001 protein_coding Mus_musculus 0 2017
ENSMUST00000138211 Glis1-005 processed_transcript Mus_musculus 0 464
ENSDART00000142833 glis3-001 protein_coding Danio_rerio 0 399
ENSMUST00000125573 Glis1-006 processed_transcript Mus_musculus 0 237
ENSMUST00000135835 Glis1-004 protein_coding Mus_musculus 0.000004 58

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