C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: blood vessel epicardial substance
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314641 BVES-003 ENSG00000112276 9606 - 6:105096822-105137174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000314641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000314641 1.563±0.00 1.215±0.00 0.106±0.00 0.976±0.82 0.862±0.19 3.730±3.37 10.870±6.86 0.012±0.00 4.122±0.00 11.384±6.14 0.054±0.00 2.640±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089G CIL_00089G_0001 VISTA 6:104925514-105527976
CIL_00082P CIL_00082P_0001 VISTA 6:105003758-105605764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001921 ISS positive regulation of receptor recycling
GO:0002027 IEA regulation of heart rate
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0005198 IDA structural molecule activity
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0005923 IDA tight junction
GO:0007517 NAS muscle organ development
GO:0008360 ISS regulation of cell shape
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016192 ISS vesicle-mediated transport
GO:0016328 IDA lateral plasma membrane
GO:0030552 IEA cAMP binding
GO:0032314 ISS regulation of Rac GTPase activity
GO:0034446 ISS substrate adhesion-dependent cell spreading
GO:0040017 ISS positive regulation of locomotion
GO:0042391 IEA regulation of membrane potential
GO:0043088 ISS regulation of Cdc42 GTPase activity
GO:0060931 IEA sinoatrial node cell development
GO:0090136 IDA epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095715 Bves-201 protein_coding Mus_musculus 0 1092
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00003 57
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00003 57

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