C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibroblast growth factor 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315930 FGF13-001 ENSG00000129682 9606 - X:138631574-138711665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315930
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315930 2.004±0.00 3.792±0.00 0.555±0.00 10.123±5.43 5.069±0.00 1.680±1.32 0.466±0.00 1.851±0.00 0.109±0.00 0.656±0.55 0.551±0.00 1.679±0.31 1.817±0.44 2.057±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PL CIL_0000PL_0002 CGP X:138631574-139563458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IDA MAPK cascade
GO:0001764 ISS neuron migration
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 ISS microtubule
GO:0005886 ISS plasma membrane
GO:0007026 ISS negative regulation of microtubule depolymerization
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0007399 TAS nervous system development
GO:0007612 ISS learning
GO:0007613 ISS memory
GO:0008017 ISS microtubule binding
GO:0008083 IEA growth factor activity
GO:0014704 ISS intercalated disc
GO:0017080 IDA sodium channel regulator activity
GO:0021766 ISS hippocampus development
GO:0021795 ISS cerebral cortex cell migration
GO:0030175 ISS filopodium
GO:0030295 IGI protein kinase activator activity
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0030426 ISS growth cone
GO:0043005 ISS neuron projection
GO:0044325 ISS ion channel binding
GO:0045200 ISS establishment of neuroblast polarity
GO:0045860 IGI positive regulation of protein kinase activity
GO:0046785 ISS microtubule polymerization
GO:0048487 ISS beta-tubulin binding
GO:0048671 ISS negative regulation of collateral sprouting
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033473 Fgf13-001 protein_coding Mus_musculus 0 2119
ENSMUST00000119306 Fgf13-008 protein_coding Mus_musculus 0 1546
ENSMUST00000119833 Fgf13-006 protein_coding Mus_musculus 0 1543
ENSMUST00000138503 Fgf13-002 processed_transcript Mus_musculus 0 939
ENSDART00000017259 fgf13a-001 protein_coding Danio_rerio 0 494
ENSDART00000010982 fgf13a-201 protein_coding Danio_rerio 0 422
ENSDART00000052949 fgf13a-002 protein_coding Danio_rerio 0 420
ENSMUST00000123660 Fgf13-003 processed_transcript Mus_musculus 8e-28 130
ENSMUST00000124402 Fgf13-004 protein_coding Mus_musculus 4e-26 124

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