C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB23, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317483 RAB23-001 ENSG00000112210 9606 - 6:57188783-57221407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000317483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000317483 2.600±0.00 3.383±0.00 3.071±0.00 6.671±0.00 9.587±6.99 17.567±7.21 3.957±0.00 44.810±0.00 6.478±2.35 4.805±0.94 5.140±0.45 15.300±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005768 IEA endosome
GO:0005776 IDA autophagic vacuole
GO:0005886 IDA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0006968 IMP cellular defense response
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0042384 IMP cilium assembly
GO:0042992 IMP negative regulation of transcription factor import into nucleus
GO:0045335 IDA phagocytic vesicle
GO:0070062 IDA extracellular vesicular exosome
GO:0097094 IMP craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115174 Rab23-003 protein_coding Mus_musculus 0 837
ENSMUST00000088287 Rab23-001 protein_coding Mus_musculus 0 837
ENSMUST00000138024 Rab23-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000151482 Rab23-006 retained_intron Mus_musculus 0 516
ENSMUST00000150593 Rab23-007 retained_intron Mus_musculus 0 510
ENSMUST00000140354 Rab23-004 retained_intron Mus_musculus 0 333
ENSMUST00000122822 Rab23-008 retained_intron Mus_musculus 0 294
ENSMUST00000132066 Rab23-009 retained_intron Mus_musculus 0 267
ENSMUST00000135330 Rab23-005 retained_intron Mus_musculus 0 217

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