C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319562 FARP1-001 ENSG00000152767 9606 + 13:98143251-98455176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000319562
Transcript ID Lung
ENST00000319562 1.486±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FZ CIL_0004FZ_0002 CGP 13:97953658-98455176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 TAS:IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0007416 ISS synapse assembly
GO:0008092 IEA cytoskeletal protein binding
GO:0010923 IDA negative regulation of phosphatase activity
GO:0030054 IEA cell junction
GO:0030425 ISS dendrite
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0032321 TAS positive regulation of Rho GTPase activity
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0045202 IEA synapse
GO:0048813 ISS dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026635 Farp1-001 protein_coding Mus_musculus 0 3439
ENSMUST00000079817 Stk24-201 protein_coding Mus_musculus 0 730
ENSMUST00000135010 Farp1-002 protein_coding Mus_musculus 0 701
ENSMUST00000153607 Farp1-003 processed_transcript Mus_musculus 0 669
ENSMUST00000137971 Farp1-004 retained_intron Mus_musculus 0 516
ENSDART00000013400 farp2-201 protein_coding Danio_rerio 0 272
ENSDART00000153595 farp2-001 protein_coding Danio_rerio 0 272

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