C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319836 MARCH8-201 ENSG00000165406 9606 - 10:45454593-45594906 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319836 7.683±0.00 9.296±0.00 1.502±0.00 2.414±0.00 5.144±2.89 3.313±1.05 5.893±4.30 4.122±0.56 2.353±1.69 2.803±2.18 3.005±0.00 3.354±2.18 3.632±1.59 9.111±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081B CIL_00081B_0001 VISTA 10:45257434-45860222
CIL_0000X4 CIL_0000X4_0002 CGP 10:45454585-45672780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0002376 IEA immune system process
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005764 IDA lysosome
GO:0005768 IDA endosome
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0031410 IEA cytoplasmic vesicle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101032 March8-002 protein_coding Mus_musculus 0 1240
ENSMUST00000079012 March8-001 protein_coding Mus_musculus 0 1240
ENSMUST00000135901 March8-006 protein_coding Mus_musculus 0 839
ENSMUST00000123405 March8-009 retained_intron Mus_musculus 0 806
ENSMUST00000123246 March8-007 retained_intron Mus_musculus 0 604
ENSMUST00000156014 March8-011 processed_transcript Mus_musculus 0 442

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