C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: membrane-associated ring finger (C3HC4) 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079012 March8-001 ENSMUSG00000025702 10090 + 6:116338024-116409540 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079012
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079012 7.199±1.28 9.774±3.82 9.508±1.56 8.266±4.18 10.775±5.18 5.019±0.55 3.008±1.29 15.431±3.07 12.762±6.24 6.283±0.49 2.201±0.84 10.891±5.72 4.977±2.65 2.573±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081B CIL_00081B_0002 VISTA 6:116052182-116663911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002495 IDA antigen processing and presentation of peptide antigen via MHC class II
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005764 ISS lysosome
GO:0005768 ISS endosome
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031410 IEA cytoplasmic vesicle
GO:0042289 IPI MHC class II protein binding
GO:0045347 IDA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319836 MARCH8-201 protein_coding Homo_sapiens 0 1240
ENST00000395769 MARCH8-001 protein_coding Homo_sapiens 0 1227
ENST00000395771 MARCH8-001 protein_coding Homo_sapiens 0 998
ENST00000453424 MARCH8-002 protein_coding Homo_sapiens 0 931
ENST00000453980 MARCH8-004 protein_coding Homo_sapiens 0 351
ENST00000476962 MARCH8-003 processed_transcript Homo_sapiens 0 922
ENST00000602712 MARCH8-005 retained_intron Homo_sapiens 0 555
ENST00000612386 MARCH8-004 protein_coding Homo_sapiens 6e-26 119
ENST00000613420 MARCH8-003 retained_intron Homo_sapiens 0 922
ENST00000616143 MARCH8-002 processed_transcript Homo_sapiens 0 931

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