C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, pyrin domain containing 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324134 NLRP12-001 ENSG00000142405 9606 - 19:53793603-53824343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324134
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324134 0.167±0.00 0.025±0.00 0.105±0.00 0.022±0.00 0.018±0.00 0.330±0.00 0.093±0.00 0.498±0.00 0.010±0.00 0.077±0.01 0.335±0.20 0.187±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ML CIL_0004ML_0001 CGP 19:53793603-53876437

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0006919 NAS activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007165 NAS signal transduction
GO:0008588 IDA release of cytoplasmic sequestered NF-kappaB
GO:0008656 NAS cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0009968 IDA negative regulation of signal transduction
GO:0031953 IDA negative regulation of protein autophosphorylation
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0043122 IDA regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043281 IDA regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045345 IDA positive regulation of MHC class I biosynthetic process
GO:0045381 NAS regulation of interleukin-18 biosynthetic process
GO:0045409 IDA negative regulation of interleukin-6 biosynthetic process
GO:0045751 IDA negative regulation of Toll signaling pathway
GO:0050710 IDA negative regulation of cytokine secretion
GO:0050711 IDA negative regulation of interleukin-1 secretion
GO:0050718 NAS positive regulation of interleukin-1 beta secretion
GO:0050728 IMP negative regulation of inflammatory response
GO:0050729 NAS positive regulation of inflammatory response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181320 NLRP12-201 protein_coding Mus_musculus 0 1784
ENSMUST00000108653 Nlrp12-201 protein_coding Mus_musculus 0 1784
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000003 66

Loading