C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIC8 guanine nucleotide exchange factor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325207 RIC8A-001 ENSG00000177963 9606 + 11:208530-215113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325207
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325207 7.244±0.00 19.667±0.00 1.028±0.00 8.016±0.00 8.364±6.73 8.768±0.00 6.736±5.79 10.477±9.45 3.720±2.73 6.305±0.00 14.679±0.00 12.008±9.16 6.840±1.50 16.415±8.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0001 CGP 11:207511-236931

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001944 IEA vasculature development
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0007193 IEA adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0007369 IEA gastrulation
GO:0008542 IEA visual learning
GO:0009416 IEA response to light stimulus
GO:0016020 IEA membrane
GO:0042074 IEA cell migration involved in gastrulation
GO:0043547 IEA positive regulation of GTPase activity
GO:0070586 IEA cell-cell adhesion involved in gastrulation
GO:0071711 IEA basement membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026558 Ric8-001 protein_coding Mus_musculus 0 1622
ENSMUST00000123925 Ric8-002 retained_intron Mus_musculus 0 1493
ENSMUST00000147815 Ric8-007 processed_transcript Mus_musculus 0 571
ENSMUST00000152212 Ric8-008 retained_intron Mus_musculus 0 549
ENSMUST00000153498 Ric8-005 processed_transcript Mus_musculus 0 549
ENSMUST00000139956 Ric8-006 processed_transcript Mus_musculus 0 540
ENSMUST00000131850 Ric8-003 retained_intron Mus_musculus 0 209

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