C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB12, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329286 RAB12-001 ENSG00000206418 9606 + 18:8609445-8639381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329286 11.483±0.00 12.687±0.00 2.482±0.00 11.497±0.37 9.169±5.70 9.758±8.82 17.999±12.09 10.339±4.02 9.612±1.41 14.800±10.79 38.161±24.80 14.648±6.07 18.555±5.57 11.141±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00025R CIL_00025R_0002 CGP 18:8609445-8832778

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005764 ISS lysosome
GO:0005776 IEA autophagic vacuole
GO:0005794 IEA Golgi apparatus
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0006914 IEA autophagy
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008333 ISS endosome to lysosome transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016239 IEA positive regulation of macroautophagy
GO:0019003 IDA GDP binding
GO:0030141 IEA secretory granule
GO:0044257 ISS cellular protein catabolic process
GO:0055038 ISS recycling endosome membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167962 Rab12-201 protein_coding Mus_musculus 0 1306
ENSMUST00000070538 Rab12-001 protein_coding Mus_musculus 0 1306
ENSMUST00000146279 Rab12-003 retained_intron Mus_musculus 0 468
ENSMUST00000135620 Rab12-002 processed_transcript Mus_musculus 2e-32 145

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