C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pro-melanin-concentrating hormone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329406 PMCH-001 ENSG00000183395 9606 - 12:102196459-102197845 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329406
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329406 0.178±0.00 0.966±0.00 0.346±0.00 0.777±0.41 0.155±0.00 0.390±0.00 0.442±0.25 0.261±0.00 0.153±0.00 1.878±0.00 0.492±0.00 1.514±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WS CIL_0008WS_0001 VISTA 12:102169845-102772373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 NAS extracellular region
GO:0005634 IEA nucleus
GO:0007218 IEA neuropeptide signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007631 ISS feeding behavior
GO:0030154 IEA cell differentiation
GO:0030354 IEA melanin-concentrating hormone activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048621 Pmch-001 protein_coding Mus_musculus 0 717
ENSMUST00000048518 Parpbp-001 protein_coding Mus_musculus 0 265

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