C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PARP1 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048518 Parpbp-001 ENSMUSG00000035365 10090 - 10:88091432-88146941 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048518 0.295±0.19 0.286±0.14 0.098±0.06 0.904±0.05 0.141±0.09 0.586±0.40 0.031±0.02 0.023±0.01 2.513±2.59 0.147±0.05 0.022±0.02 0.674±0.32 1.453±1.32 3.415±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WS CIL_0008WS_0002 VISTA 10:87568234-88170738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 ISS chromatin
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:2000042 ISS negative regulation of double-strand break repair via homologous recombination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327680 PARPBP-001 protein_coding Homo_sapiens 0 1129
ENST00000329406 PMCH-001 protein_coding Homo_sapiens 0 265
ENST00000392909 PARPBP-012 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000392911 PARPBP-006 protein_coding Homo_sapiens 0 1096
ENST00000392914 PARPBP-013 retained_intron Homo_sapiens 0 344
ENST00000412715 PARPBP-010 protein_coding Homo_sapiens 0 551
ENST00000415808 PMCHL2-004 processed_transcript Homo_sapiens 9.80909e-45 185
ENST00000417507 PARPBP-009 protein_coding Homo_sapiens 0 551
ENST00000418902 PMCHL1-001 processed_transcript Homo_sapiens 9.80909e-45 185
ENST00000423102 PMCHL1-004 transcribed_unprocessed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000423301 PMCHL1-002 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000430902 PMCHL1-003 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000450213 PMCHL2-002 processed_transcript Homo_sapiens 9.80909e-45 185
ENST00000457614 PARPBP-003 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000457791 PMCHL2-001 transcribed_unprocessed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000535811 PARPBP-011 processed_transcript Homo_sapiens 0 342
ENST00000537257 PARPBP-007 protein_coding Homo_sapiens 0 344
ENST00000541394 PARPBP-002 protein_coding Homo_sapiens 0 800
ENST00000541668 PARPBP-004 processed_transcript Homo_sapiens 0 381
ENST00000543784 PARPBP-008 protein_coding Homo_sapiens 0 300
ENST00000610574 AC145141.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000618044 AC145141.1-004 processed_transcript Homo_sapiens 9.80909e-45 185
ENST00000619209 AC145141.1-002 processed_transcript Homo_sapiens 9.80909e-45 185

Loading