C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha tubulin acetyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329992 ATAT1-006 ENSG00000137343 9606 + 6:30626886-30644679 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungPlacentaTestisENST00000329992
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Placenta Testis
ENST00000329992 0.510±0.00 5.621±3.76 0.326±0.00 0.358±0.00 0.316±0.00 0.317±0.00 0.625±0.00 0.597±0.00 0.832±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005905 IEA coated pit
GO:0019799 IMP:IEA tubulin N-acetyltransferase activity
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0048666 IEA neuron development
GO:0050662 IDA coenzyme binding
GO:0070507 IEA regulation of microtubule cytoskeleton organization
GO:0071929 IDA:IEA alpha-tubulin acetylation
GO:0072686 IDA mitotic spindle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141662 Atat1-004 protein_coding Mus_musculus 0 1219
ENSMUST00000149277 Atat1-003 protein_coding Mus_musculus 0 1168
ENSMUST00000061052 Atat1-001 protein_coding Mus_musculus 0 1168
ENSMUST00000056034 Atat1-005 protein_coding Mus_musculus 0 725
ENSMUST00000077494 Atat1-002 protein_coding Mus_musculus 0 725
ENSMUST00000127959 Atat1-007 processed_transcript Mus_musculus 0 658
ENSMUST00000141132 Atat1-009 protein_coding Mus_musculus 0 652
ENSMUST00000140990 Atat1-006 retained_intron Mus_musculus 0 627
ENSMUST00000137069 Atat1-010 processed_transcript Mus_musculus 0 556
ENSMUST00000137182 Atat1-008 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000130309 Atat1-012 retained_intron Mus_musculus 0 414
ENSMUST00000126744 Atat1-013 nonsense_mediated_decay Mus_musculus 0 407
ENSMUST00000140292 Atat1-014 protein_coding Mus_musculus 0 333
ENSMUST00000151009 Atat1-011 retained_intron Mus_musculus 0 281
ENSMUST00000174436 Atat1-016 retained_intron Mus_musculus 0 246

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