C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331968 PRKD1-001 ENSG00000184304 9606 - 14:29576481-29927742 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000331968
Transcript ID Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000331968 0.582±0.00 0.628±0.44 0.614±0.00 1.072±0.00 0.297±0.00 0.170±0.00 4.306±3.12 0.514±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007XL CIL_0007XL_0001 VISTA 14:28974168-29576675
CIL_00099Q CIL_00099Q_0001 VISTA 14:29088724-29691342
CIL_0008M6 CIL_0008M6_0001 VISTA 14:29091323-29693142
CIL_00094H CIL_00094H_0001 VISTA 14:29124991-29726376
CIL_0008VR CIL_0008VR_0001 VISTA 14:29142114-29743308
CIL_00092M CIL_00092M_0001 VISTA 14:29158278-29759612
CIL_00095N CIL_00095N_0001 VISTA 14:29191285-29792799
CIL_0008C7 CIL_0008C7_0001 VISTA 14:29227965-29829685
CIL_0005EN CIL_0005EN_0001 CGP 14:29576479-30620063

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001938 IGI positive regulation of endothelial cell proliferation
GO:0004672 IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004697 IEA protein kinase C activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005829 ISS cytosol
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005938 IEA cell cortex
GO:0006468 IEA protein phosphorylation
GO:0006665 TAS sphingolipid metabolic process
GO:0006915 IEA apoptotic process
GO:0006954 IEA inflammatory response
GO:0007030 IMP Golgi organization
GO:0007165 TAS signal transduction
GO:0007229 TAS integrin-mediated signaling pathway
GO:0008283 TAS cell proliferation
GO:0010595 IMP positive regulation of endothelial cell migration
GO:0010837 ISS regulation of keratinocyte proliferation
GO:0010976 IMP positive regulation of neuron projection development
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0030148 TAS sphingolipid biosynthetic process
GO:0032793 IGI positive regulation of CREB transcription factor activity
GO:0033138 IGI positive regulation of peptidyl-serine phosphorylation
GO:0034599 IDA cellular response to oxidative stress
GO:0035556 IMP:IEA intracellular signal transduction
GO:0035924 IMP cellular response to vascular endothelial growth factor stimulus
GO:0038033 IMP positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway
GO:0042802 IPI identical protein binding
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043536 IMP positive regulation of blood vessel endothelial cell migration
GO:0044281 TAS small molecule metabolic process
GO:0045087 IEA innate immune response
GO:0045669 ISS positive regulation of osteoblast differentiation
GO:0045766 IMP positive regulation of angiogenesis
GO:0045806 TAS negative regulation of endocytosis
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046777 TAS protein autophosphorylation
GO:0046872 IEA metal ion binding
GO:0048010 IMP vascular endothelial growth factor receptor signaling pathway
GO:0048193 ISS Golgi vesicle transport
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0060548 IMP negative regulation of cell death
GO:1901727 IGI positive regulation of histone deacetylase activity
GO:2001028 IMP positive regulation of endothelial cell chemotaxis
GO:2001044 TAS regulation of integrin-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002765 Prkd1-201 protein_coding Mus_musculus 0 3825

Loading