C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pescadillo ribosomal biogenesis factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335214 PES1-005 ENSG00000100029 9606 - 22:30576835-30591858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverMuscleOvaryTestisENST00000335214
Transcript ID Adrenal Brain Heart Kidney Liver Muscle Ovary Testis
ENST00000335214 9.251±0.00 4.179±2.77 2.404±1.85 19.413±0.00 11.088±0.00 16.475±0.00 7.649±6.49 9.654±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 IMP maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 IMP maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI protein binding
GO:0005654 IDA nucleoplasm
GO:0005730 IDA:IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006364 IMP rRNA processing
GO:0008283 NAS cell proliferation
GO:0016020 IDA membrane
GO:0030687 IDA preribosome, large subunit precursor
GO:0042254 IEA ribosome biogenesis
GO:0042273 IC ribosomal large subunit biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0051726 IMP regulation of cell cycle
GO:0070545 IDA PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020705 Pes1-201 protein_coding Mus_musculus 0 1748
ENSMUST00000109985 Pes1-001 protein_coding Mus_musculus 0 1692
ENSMUST00000178604 Gm5472-201 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000137544 Pes1-002 processed_transcript Mus_musculus 0 510
ENSMUST00000042344 4930556J24Rik-001 protein_coding Mus_musculus 1e-34 152

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