C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336278 SNTB2-001 ENSG00000168807 9606 + 16:69187129-69309052 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336278 7.762±0.00 9.375±0.00 4.234±0.00 2.922±0.71 9.702±0.00 4.666±0.28 2.391±0.59 8.730±0.00 12.861±0.00 4.138±1.20 1.275±0.00 5.498±1.43 3.110±0.37 4.415±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CT CIL_0004CT_0001 CGP 16:69118010-69231130
CIL_0004I5 CIL_0004I5_0001 CGP 16:69131291-69309052
CIL_0004YA CIL_0004YA_0002 CGP 16:69187129-69322700

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0005925 IDA focal adhesion
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0016020 TAS membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047425 Sntb2-201 protein_coding Mus_musculus 0 2209
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0006 53
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0006 53

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