C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, basic 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047425 Sntb2-201 ENSMUSG00000041308 10090 + 8:106935750-107014192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047425 5.995±3.23 10.017±1.13 5.371±0.00 1.001±0.09 8.951±1.25 3.339±0.56 2.280±0.23 5.011±0.60 0.843±0.24 8.376±0.60 0.739±0.11 11.861±5.18 1.193±0.50 6.944±3.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I5 CIL_0004I5_0002 CGP 8:106893640-107014192
CIL_0004YA CIL_0004YA_0003 CGP 8:106935750-107045755

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0031410 IEA cytoplasmic vesicle
GO:0043234 ISO protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336278 SNTB2-001 protein_coding Homo_sapiens 0 2209
ENST00000360496 SNTB2-004 protein_coding Homo_sapiens 0 579
ENST00000467311 SNTB2-002 nonsense_mediated_decay Homo_sapiens 0 1038
ENST00000524887 SNTB2-003 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000525632 SNTB2-007 protein_coding Homo_sapiens 0 747
ENST00000528525 SNTB2-006 processed_transcript Homo_sapiens 0 484
ENST00000571496 SNTB2-001 protein_coding Homo_sapiens 0 749
ENST00000571655 SNTB2-002 protein_coding Homo_sapiens 0 749
ENST00000572013 SNTB2-006 processed_transcript Homo_sapiens 0 195
ENST00000574270 SNTB2-003 protein_coding Homo_sapiens 0 333
ENST00000577080 SNTB2-004 protein_coding Homo_sapiens 0 265
ENST00000613835 SNTB2-007 protein_coding Homo_sapiens 0 333

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