C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3 pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338274 TPM3P7-001 ENSG00000187536 9606 - 2:25809925-25810656 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338274
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338274 0.061±0.00 0.235±0.00 0.439±0.00 0.530±0.43 0.434±0.42 0.207±0.00 0.074±0.03 0.572±0.00 0.280±0.26 0.281±0.25 0.471±0.56 0.074±0.00 0.101±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JK CIL_0003JK_0002 CGP 2:25377198-25878516
CIL_0003JN CIL_0003JN_0002 CGP 2:25733753-25982749

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 795
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 789
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 673
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 673
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 568
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 568
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 446
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 420
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 420
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 300
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 300
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 300
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 233
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 4.2039e-45 185
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 9.00054e-42 174
ENSMUST00000143281 Tpm3-015 retained_intron Mus_musculus 9.99995e-41 171
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 6e-39 165

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