C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDUFA4, mitochondrial complex associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339600 NDUFA4-001 ENSG00000189043 9606 - 7:10931951-10940256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339600 12.317±0.00 17.317±0.00 3.906±0.00 29.375±2.26 9.563±6.43 9.773±5.44 35.160±21.78 12.432±2.10 8.465±2.82 6.630±3.50 13.019±5.58 14.637±8.73 10.819±6.05 9.404±8.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022P CIL_00022P_0001 CGP 7:8433955-10940256
CIL_000895 CIL_000895_0001 VISTA 7:10344691-10945732
CIL_00022Q CIL_00022Q_0001 CGP 7:10931951-11169623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004129 IMP cytochrome-c oxidase activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005747 IDA mitochondrial respiratory chain complex I
GO:0005751 IDA mitochondrial respiratory chain complex IV
GO:0006120 NAS mitochondrial electron transport, NADH to ubiquinone
GO:0008137 NAS NADH dehydrogenase (ubiquinone) activity
GO:0022904 TAS respiratory electron transport chain
GO:0032403 IDA protein complex binding
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:1902600 IMP hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188583 Ccdc115-002 retained_intron Mus_musculus 0.00000002 66
ENSMUST00000042493 Ccdc115-001 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000039925 Upb1-001 protein_coding Mus_musculus 0.00000006 64

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