C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00022P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122584-ENSG00000189043 CGP 9606 7:8433955-10940256
GeneTranscriptPositionBiotype
ENSG00000122584 (NXPH1)
neurexophilin 1 		ENST00000405863 (NXPH1-001) 8433955-8752963 protein_coding
ENST00000429542 (NXPH1-004) 8435195-8751383 protein_coding
ENST00000438764 (NXPH1-003) 8435063-8751371 protein_coding
ENST00000497400 (NXPH1-002) 8690287-8751987 processed_transcript
ENST00000602349 (NXPH1-201) 8751007-8752959 protein_coding
ENSG00000189043 (NDUFA4)
NDUFA4, mitochondrial complex associated 		ENST00000339600 (NDUFA4-001) 10931951-10940256 protein_coding
ENST00000463308 (NDUFA4-004) 10938104-10939051 retained_intron
ENST00000470761 (NDUFA4-005) 10933665-10939834 retained_intron
ENST00000482299 (NDUFA4-002) 10933515-10938517 retained_intron
ENST00000486007 (NDUFA4-003) 10937867-10940079 retained_intron
ENST00000492822 (NDUFA4-006) 10939213-10940135 processed_transcript
ENSG00000197320 (AC060834.2)
 ENST00000443027 (AC060834.2-001) 9726241-9728272 processed_pseudogene
ENSG00000229091 (HSPA8P8)
heat shock 70kDa protein 8 pseudogene 8 		ENST00000419827 (HSPA8P8-001) 10451311-10452526 processed_pseudogene
ENSG00000233876 (GAPDHP68)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 		ENST00000434621 (GAPDHP68-001) 9614978-9615985 processed_pseudogene
ENSG00000234356 (AC009945.4)
 ENST00000453188 (AC009945.4-001) 10476581-10476878 processed_pseudogene
ENSG00000234710 (AC060834.3)
 ENST00000447999 (AC060834.3-001) 9737322-9769513 lincRNA
ENSG00000235431 (AC006373.1)
 ENST00000451755 (AC006373.1-001) 9961024-9981817 lincRNA
ENSG00000236414 (AC004535.2)
 ENST00000422697 (AC004535.2-001) 10702676-10707406 lincRNA
ENSG00000271077 (AC096553.5)
 ENST00000605169 (AC096553.5-001) 9634270-9635703 processed_pseudogene
ENSG00000278254 (RP4-668E10.4)
 ENST00000612945 (RP4-668E10.4-002) 9097271-9189785 lincRNA
ENST00000613936 (RP4-668E10.4-001) 9097271-9189765 lincRNA
ENST00000614137 (RP4-668E10.4-003) 9097271-9189857 lincRNA
ENST00000614289 (RP4-668E10.4-004) 9082557-9189785 lincRNA
ENSG00000278446 (RP4-668E10.3)
 ENST00000614131 (RP4-668E10.3-001) 9170948-9171273 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_00022P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046178-ENSMUSG00000029632 CGP 10090 6:8948431-11907446
GeneTranscriptPositionBiotype
ENSMUSG00000029632 (Ndufa4)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 		ENSMUST00000031637 (Ndufa4-201) 11900373-11907446 protein_coding
ENSMUSG00000046178 (Nxph1)
neurexophilin 1 		ENSMUST00000060369 (Nxph1-002) 8949676-9249030 protein_coding
ENSMUST00000160300 (Nxph1-001) 8948614-9249032 protein_coding
ENSMUST00000162942 (Nxph1-003) 8948431-8952430 processed_transcript
ENSMUSG00000094367 (Gm26058)
predicted gene, 26058 		ENSMUST00000180294 (Gm26058-201) 10840587-10840693 snRNA
ENSMUSG00000098845 (Gm27894)
predicted gene, 27894 		ENSMUST00000184177 (Gm27894-201) 10858427-10858518 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00022P_0001ENSG00000122584ENST00000405863ENST00000429542ENST00000438764ENST00000497400ENST00000602349ENSG00000189043ENST00000339600ENST00000463308ENST00000470761ENST00000482299ENST00000486007ENST00000492822ENSG00000197320ENST00000443027ENSG00000229091ENST00000419827ENSG00000233876ENST00000434621ENSG00000234356ENST00000453188ENSG00000234710ENST00000447999ENSG00000235431ENST00000451755ENSG00000236414ENST00000422697ENSG00000271077ENST00000605169ENSG00000278254ENST00000612945ENST00000613936ENST00000614137ENST00000614289ENSG00000278446ENST00000614131CIL_00022P_0002ENSMUSG00000029632ENSMUST00000031637ENSMUSG00000046178ENSMUST00000060369ENSMUST00000160300ENSMUST00000162942ENSMUSG00000094367ENSMUST00000180294ENSMUSG00000098845ENSMUST00000184177
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00022P_0001ENSG00000122584ENST00000405863ENST00000438764ENST00000497400ENST00000602349ENSG00000189043ENST00000339600ENST00000470761ENST00000482299ENST00000486007ENSG00000197320ENST00000443027ENSG00000229091ENST00000419827ENSG00000233876ENST00000434621ENSG00000234356ENST00000453188ENSG00000234710ENST00000447999ENSG00000235431ENST00000451755ENSG00000236414ENST00000422697ENSG00000271077ENST00000605169ENSG00000278254ENST00000612945ENST00000614137ENST00000614289ENSG00000278446ENST00000614131CIL_00022P_0002ENSMUSG00000029632ENSMUST00000031637ENSMUSG00000046178ENSMUST00000060369ENSMUST00000160300ENSMUST00000162942ENSMUSG00000094367ENSMUST00000180294ENSMUSG00000098845ENSMUST00000184177
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122584 ENST00000405863 N/A N/A N/A 1.874±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.223±0.00
ENST00000497400 N/A N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000602349 N/A N/A N/A 2.214±0.07 N/A N/A N/A N/A 0.035±0.00 N/A N/A 0.011±0.00 0.018±0.00 0.028±0.00
ENSG00000189043 ENST00000339600 12.317±0.00 17.317±0.00 3.906±0.00 29.375±2.26 9.563±6.43 9.773±5.44 35.160±21.78 12.432±2.10 8.465±2.82 6.630±3.50 13.019±5.58 14.637±8.73 10.819±6.05 9.404±8.52
ENST00000463308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470761 30.605±0.00 46.306±0.00 N/A N/A 49.912±0.00 58.574±0.00 201.956±0.00 N/A N/A N/A N/A 41.700±0.00 N/A 26.726±23.50
ENST00000482299 N/A N/A N/A N/A N/A N/A 96.324±0.00 N/A N/A N/A N/A 36.469±0.00 14.917±0.81 3.037±0.00
ENST00000486007 N/A N/A N/A N/A 3.969±0.00 N/A 227.390±0.00 N/A 36.303±0.00 32.708±0.00 37.153±0.00 43.043±19.58 24.898±2.40 6.782±0.00
ENST00000492822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197320 ENST00000443027 N/A 0.012±0.00 N/A 0.221±0.00 N/A 0.077±0.00 0.033±0.00 0.025±0.00 N/A 0.023±0.00 0.563±0.00 0.025±0.00 0.036±0.00 0.100±0.05
ENSG00000229091 ENST00000419827 0.021±0.00 0.011±0.00 N/A 0.100±0.00 0.033±0.00 0.040±0.00 0.010±0.00 0.043±0.00 0.057±0.00 0.069±0.00 0.056±0.00 0.043±0.02 0.022±0.00 0.108±0.00
ENSG00000233876 ENST00000434621 0.015±0.00 N/A N/A 0.053±0.00 0.101±0.00 0.031±0.00 0.028±0.00 0.049±0.00 0.014±0.00 0.074±0.00 0.539±0.00 N/A N/A 0.081±0.01
ENSG00000234356 ENST00000453188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.01
ENSG00000234710 ENST00000447999 N/A N/A N/A 0.146±0.11 N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A 0.589±0.43
ENSG00000235431 ENST00000451755 N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00
ENSG00000236414 ENST00000422697 N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.18
ENSG00000271077 ENST00000605169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A 0.065±0.00
ENSG00000278254 ENST00000612945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A
ENST00000613936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614137 N/A N/A N/A 0.138±0.00 N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000614289 N/A N/A N/A 0.037±0.01 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000278446 ENST00000614131 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029632 ENSMUST00000031637 488.482±84.86 511.524±67.50 393.238±19.02 337.368±116.93 483.736±162.77 273.701±24.55 1480.205±192.74 1087.731±74.42 649.494±151.67 267.157±12.00 731.771±40.08 304.517±22.96 368.215±110.53 39.256±10.69
ENSMUSG00000046178 ENSMUST00000060369 0.069±0.04 0.135±0.04 0.178±0.01 3.782±2.30 0.135±0.07 0.068±0.03 0.011±0.00 0.062±0.00 0.015±0.01 0.094±0.03 0.040±0.00 0.078±0.06 0.014±0.00 0.134±0.06
ENSMUST00000160300 0.042±0.00 0.257±0.11 0.099±0.00 6.696±1.48 0.118±0.08 0.055±0.01 N/A 0.064±0.03 0.021±0.00 0.019±0.00 N/A 0.055±0.00 0.021±0.00 0.502±0.24
ENSMUST00000162942 N/A 0.161±0.07 N/A N/A 0.055±0.03 0.043±0.00 N/A N/A 0.013±0.01 N/A N/A 0.021±0.00 N/A 0.177±0.02
ENSMUSG00000094367 ENSMUST00000180294 N/A N/A N/A 3.653±0.00 N/A N/A N/A N/A 3.103±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000098845 ENSMUST00000184177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 49.559±0.00

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