C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIF, polypeptide 2, 30kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340473 GTF2F2-001 ENSG00000188342 9606 + 13:45120515-45284909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340473 3.457±0.00 5.219±0.00 1.253±0.00 3.852±1.13 3.691±0.41 4.117±0.67 3.470±0.63 2.374±0.69 4.147±1.22 3.285±0.20 2.753±0.62 10.278±3.28 3.588±0.98 6.046±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AR CIL_0007AR_0002 CGP 13:44989529-45284909
CIL_0007A9 CIL_0007A9_0002 CGP 13:45120515-45284909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005674 IEA transcription factor TFIIF complex
GO:0006200 IEA ATP catabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS:IEA transcription from RNA polymerase II promoter
GO:0006367 TAS:IEA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0016032 TAS viral process
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088922 Gtf2f2-201 protein_coding Mus_musculus 0 979

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