C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapsin I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340666 SYN1-002 ENSG00000008056 9606 - X:47571904-47619853 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverTestisENST00000340666
Transcript ID Brain Colon Liver Testis
ENST00000340666 46.281±37.14 0.334±0.00 6.212±0.00 2.091±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GC CIL_0005GC_0001 CGP X:47561100-47619853
CIL_0006I4 CIL_0006I4_0001 CGP X:47571898-47619853

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0003824 IEA catalytic activity
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005524 TAS ATP binding
GO:0005794 IEA Golgi apparatus
GO:0007268 TAS synaptic transmission
GO:0007269 IEA neurotransmitter secretion
GO:0008021 TAS synaptic vesicle
GO:0008152 IEA metabolic process
GO:0019901 ISS protein kinase binding
GO:0030054 IEA cell junction
GO:0046928 TAS regulation of neurotransmitter secretion
GO:2000300 NAS regulation of synaptic vesicle exocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115345 Syn1-001 protein_coding Mus_musculus 0 3347
ENSMUST00000081893 Syn1-201 protein_coding Mus_musculus 0 2553

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