C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005GC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078061-ENSG00000008056 CGP 9606 X:47561100-47619853
GeneTranscriptPositionBiotype
ENSG00000008056 (SYN1)
synapsin I 		ENST00000295987 (SYN1-001) 47571898-47619853 protein_coding
ENST00000340666 (SYN1-002) 47571904-47619853 protein_coding
ENSG00000102265 (TIMP1)
TIMP metallopeptidase inhibitor 1 		ENST00000218388 (TIMP1-001) 47582313-47586789 protein_coding
ENST00000377017 (TIMP1-003) 47582450-47586789 protein_coding
ENST00000441738 (TIMP1-004) 47582509-47585254 protein_coding
ENST00000445623 (TIMP1-005) 47585342-47586789 protein_coding
ENST00000456754 (TIMP1-002) 47582408-47586023 protein_coding
CIL_0005GC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001127-ENSMUSG00000037217 CGP 10090 X:20797814-20921004
GeneTranscriptPositionBiotype
ENSMUSG00000001127 (Araf)
v-raf murine sarcoma 3611 viral oncogene homolog 		ENSMUST00000001155 (Araf-001) 20848543-20860519 protein_coding
ENSMUST00000120356 (Araf-004) 20848578-20852889 protein_coding
ENSMUST00000122312 (Araf-005) 20848566-20852904 protein_coding
ENSMUST00000122850 (Araf-007) 20848589-20853450 protein_coding
ENSMUST00000123219 (Araf-010) 20851130-20852214 retained_intron
ENSMUST00000128250 (Araf-009) 20857723-20860208 protein_coding
ENSMUST00000136451 (Araf-006) 20797814-20860497 nonsense_mediated_decay
ENSMUST00000148032 (Araf-002) 20848575-20854560 processed_transcript
ENSMUST00000150190 (Araf-008) 20848582-20851717 retained_intron
ENSMUST00000152955 (Araf-003) 20848564-20855510 retained_intron
ENSMUSG00000001131 (Timp1)
tissue inhibitor of metalloproteinase 1 		ENSMUST00000009530 (Timp1-001) 20870221-20874735 protein_coding
ENSMUST00000115342 (Timp1-002) 20870166-20874733 protein_coding
ENSMUSG00000037217 (Syn1)
synapsin I 		ENSMUST00000081893 (Syn1-201) 20860515-20920918 protein_coding
ENSMUST00000115345 (Syn1-001) 20860511-20921004 protein_coding
ENSMUSG00000080757 (Gm15029)
predicted gene 15029 		ENSMUST00000119742 (Gm15029-001) 20911596-20911794 processed_pseudogene
ENSMUSG00000082393 (Gm15028)
predicted gene 15028 		ENSMUST00000120295 (Gm15028-001) 20842105-20842474 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GC_0001ENSG00000008056ENST00000295987ENST00000340666ENSG00000102265ENST00000218388ENST00000377017ENST00000441738ENST00000445623ENST00000456754CIL_0005GC_0002ENSMUSG00000001127ENSMUST00000001155ENSMUST00000120356ENSMUST00000122312ENSMUST00000122850ENSMUST00000123219ENSMUST00000128250ENSMUST00000136451ENSMUST00000148032ENSMUST00000150190ENSMUST00000152955ENSMUSG00000001131ENSMUST00000009530ENSMUST00000115342ENSMUSG00000037217ENSMUST00000081893ENSMUST00000115345ENSMUSG00000080757ENSMUST00000119742ENSMUSG00000082393ENSMUST00000120295
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GC_0001ENSG00000008056ENST00000295987ENST00000340666ENSG00000102265ENST00000218388ENST00000377017ENST00000441738CIL_0005GC_0002ENSMUSG00000001127ENSMUST00000001155ENSMUST00000120356ENSMUST00000122312ENSMUST00000122850ENSMUST00000123219ENSMUST00000136451ENSMUST00000152955ENSMUSG00000001131ENSMUST00000009530ENSMUST00000115342ENSMUSG00000037217ENSMUST00000081893ENSMUST00000115345ENSMUSG00000080757ENSMUST00000119742ENSMUSG00000082393ENSMUST00000120295
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008056 ENST00000295987 N/A N/A N/A 40.116±36.95 N/A 2.398±0.00 5.258±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000340666 N/A N/A N/A 46.281±37.14 N/A 0.334±0.00 N/A N/A 6.212±0.00 N/A N/A N/A N/A 2.091±1.38
ENSG00000102265 ENST00000218388 94.243±0.00 340.355±0.00 1.310±0.00 10.945±10.14 33.576±16.07 94.976±91.39 44.972±42.89 37.835±32.01 217.627±212.49 455.120±449.60 29.015±0.00 231.537±283.96 288.974±235.16 194.961±162.18
ENST00000377017 N/A 339.942±0.00 N/A N/A 27.915±0.00 N/A N/A 70.244±64.14 76.538±0.00 N/A 2.703±0.00 11.485±0.67 139.313±0.00 80.033±71.63
ENST00000441738 N/A N/A 1.881±0.00 N/A 15.267±0.00 1.559±0.00 N/A N/A 3.883±0.00 N/A 4.473±0.00 N/A N/A N/A
ENST00000445623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001127 ENSMUST00000001155 30.868±6.31 92.268±3.59 25.808±0.47 22.575±0.00 41.745±8.61 57.464±7.14 15.664±3.38 47.954±8.08 32.902±13.33 35.954±5.33 8.351±0.74 53.616±12.52 11.666±6.10 8.410±0.67
ENSMUST00000120356 N/A N/A 24.913±0.00 45.724±5.82 N/A N/A 12.345±0.00 N/A N/A N/A 24.820±3.00 N/A 6.347±2.98 0.473±0.00
ENSMUST00000122312 12.752±2.92 N/A 13.860±0.00 22.751±5.82 20.262±0.00 N/A 7.721±0.73 8.643±0.00 7.344±0.93 20.118±2.61 4.509±0.49 17.622±8.17 5.483±2.65 1.759±0.87
ENSMUST00000122850 27.070±0.00 N/A N/A N/A 39.106±0.00 N/A 24.253±3.45 N/A N/A N/A 15.738±0.00 N/A N/A N/A
ENSMUST00000123219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00
ENSMUST00000128250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136451 11.672±1.45 N/A N/A N/A 11.276±1.68 14.218±0.32 N/A N/A N/A 8.994±0.00 N/A 11.336±1.33 4.014±0.07 N/A
ENSMUST00000148032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.350±0.00 4.153±1.96 N/A
ENSMUSG00000001131 ENSMUST00000009530 3.614±1.73 7.404±0.73 3.648±0.33 0.796±0.04 3.068±0.34 1.794±0.84 1.602±0.69 0.314±0.14 0.504±0.29 2.925±0.17 0.442±0.24 78.889±20.50 6.997±3.67 0.632±0.20
ENSMUST00000115342 5.276±2.02 14.104±3.03 5.193±1.04 0.820±0.14 6.034±0.49 3.054±0.64 3.141±0.63 0.659±0.27 0.624±0.39 5.099±1.15 0.420±0.09 88.298±45.23 7.251±3.99 0.727±0.27
ENSMUSG00000037217 ENSMUST00000081893 N/A N/A N/A 75.768±63.73 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115345 N/A N/A N/A 11.949±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080757 ENSMUST00000119742 N/A N/A N/A 1.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082393 ENSMUST00000120295 0.652±0.00 N/A N/A 0.328±0.14 N/A N/A N/A N/A 0.047±0.00 N/A N/A 0.751±0.00 0.038±0.01 0.438±0.00

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