C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell cycle associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341394 CAPRIN1-001 ENSG00000135387 9606 + 11:34051683-34101156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341394
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341394 24.050±0.00 22.551±0.00 9.665±4.76 20.859±4.83 15.763±4.44 8.320±5.76 17.544±11.09 7.946±0.26 17.118±9.06 9.686±0.00 26.699±13.89 20.616±3.80 33.961±7.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000929 CIL_000929_0001 VISTA 11:33642739-34246310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003723 ISS RNA binding
GO:0005737 IDA cytoplasm
GO:0005887 TAS integral component of plasma membrane
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0017148 ISS negative regulation of translation
GO:0042995 IEA cell projection
GO:0044822 IDA poly(A) RNA binding
GO:0050775 ISS positive regulation of dendrite morphogenesis
GO:0061003 ISS positive regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028607 Caprin1-001 protein_coding Mus_musculus 0 4728
ENSMUST00000111147 Caprin1-002 protein_coding Mus_musculus 0 4553
ENSMUST00000143349 Caprin1-016 protein_coding Mus_musculus 0 870
ENSMUST00000143188 Caprin1-008 protein_coding Mus_musculus 0 861
ENSMUST00000141750 Caprin1-007 processed_transcript Mus_musculus 0 795
ENSMUST00000132537 Caprin1-013 retained_intron Mus_musculus 0 649
ENSMUST00000149175 Caprin1-014 retained_intron Mus_musculus 0 608
ENSMUST00000145770 Caprin1-005 retained_intron Mus_musculus 0 534
ENSMUST00000146527 Caprin1-003 retained_intron Mus_musculus 0 416
ENSMUST00000137390 Caprin1-012 retained_intron Mus_musculus 0 351
ENSMUST00000145697 Caprin1-004 processed_transcript Mus_musculus 0 326
ENSMUST00000128477 Caprin1-011 processed_transcript Mus_musculus 0 303
ENSMUST00000145606 Caprin1-015 protein_coding Mus_musculus 0 272
ENSMUST00000155733 Caprin1-006 processed_transcript Mus_musculus 0 239

Loading