C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 1, alkali; skeletal, fast
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341685 MYL1-002 ENSG00000168530 9606 - 2:210290150-210303629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverMuscleOvaryTestisENST00000341685
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000341685 0.016±0.00 0.055±0.00 0.047±0.00 61.578±59.86 0.121±0.08 0.200±0.00 1.988±0.00 605.475±358.85 0.030±0.00 10.009±9.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AJ CIL_0000AJ_0002 CGP 2:210290150-210477652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0005859 NAS muscle myosin complex
GO:0006936 IDA muscle contraction
GO:0008307 NAS structural constituent of muscle
GO:0030016 IDA myofibril
GO:0030017 NAS sarcomere
GO:0030049 NAS muscle filament sliding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119429 Myl1-002 protein_coding Mus_musculus 0 617
ENSMUST00000186202 Myl1-007 protein_coding Mus_musculus 0 579
ENSMUST00000120415 Myl1-004 protein_coding Mus_musculus 0 545
ENSMUST00000027151 Myl1-001 protein_coding Mus_musculus 0 538
ENSMUST00000150542 Myl1-003 processed_transcript Mus_musculus 0 525
ENSMUST00000160100 Myl1-005 protein_coding Mus_musculus 0 291
ENSMUST00000186346 Myl1-008 retained_intron Mus_musculus 0 220

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