C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342183 NRXN1-012 ENSG00000179915 9606 - 2:49918505-50347754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverMusclePlacentaENST00000342183
Transcript ID Bladder Brain Breast Kidney Liver Muscle Placenta
ENST00000342183 0.093±0.00 16.005±0.20 0.046±0.00 0.020±0.00 0.715±0.00 0.014±0.00 0.058±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 ISS angiogenesis
GO:0005102 ISS receptor binding
GO:0005246 ISS calcium channel regulator activity
GO:0005886 ISS plasma membrane
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007158 ISS neuron cell-cell adhesion
GO:0007268 ISS synaptic transmission
GO:0007269 ISS neurotransmitter secretion
GO:0007416 ISS synapse assembly
GO:0007612 IMP learning
GO:0009986 ISS cell surface
GO:0016021 IEA integral component of membrane
GO:0016339 ISS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0021707 ISS cerebellar granule cell differentiation
GO:0023041 TAS neuronal signal transduction
GO:0030054 IEA cell junction
GO:0030139 ISS endocytic vesicle
GO:0030534 IMP adult behavior
GO:0035176 IMP social behavior
GO:0035418 ISS protein localization to synapse
GO:0042734 TAS presynaptic membrane
GO:0044295 ISS axonal growth cone
GO:0045184 ISS establishment of protein localization
GO:0046872 IEA metal ion binding
GO:0048306 ISS calcium-dependent protein binding
GO:0050839 ISS cell adhesion molecule binding
GO:0051490 ISS negative regulation of filopodium assembly
GO:0051968 ISS positive regulation of synaptic transmission, glutamatergic
GO:0071625 IMP vocalization behavior
GO:0090004 ISS positive regulation of establishment of protein localization to plasma membrane
GO:0090129 ISS positive regulation of synapse maturation
GO:0097091 ISS synaptic vesicle clustering
GO:0097104 ISS postsynaptic membrane assembly
GO:0097105 ISS presynaptic membrane assembly
GO:0097109 ISS neuroligin family protein binding
GO:0097112 ISS gamma-aminobutyric acid receptor clustering
GO:0097114 ISS N-methyl-D-aspartate receptor clustering
GO:0097116 ISS gephyrin clustering
GO:0097117 ISS guanylate kinase-associated protein clustering
GO:0097118 ISS neuroligin clustering
GO:0097119 ISS postsynaptic density protein 95 clustering
GO:0097120 ISS receptor localization to synapse
GO:2000310 ISS regulation of N-methyl-D-aspartate selective glutamate receptor activity
GO:2000311 ISS regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174337 Nrxn1-016 protein_coding Mus_musculus 0 2658
ENSMUST00000172466 Nrxn1-017 protein_coding Mus_musculus 0 1664
ENSMUST00000174331 Nrxn1-015 protein_coding Mus_musculus 0 1495
ENSMUST00000160844 Nrxn1-001 protein_coding Mus_musculus 0 1456
ENSMUST00000160800 Nrxn1-014 protein_coding Mus_musculus 0 1243
ENSMUST00000159778 Nrxn1-009 protein_coding Mus_musculus 0 1177
ENSMUST00000161402 Nrxn1-011 protein_coding Mus_musculus 0 1000
ENSMUST00000054059 Nrxn1-020 protein_coding Mus_musculus 0 1000
ENSMUST00000072671 Nrxn1-002 protein_coding Mus_musculus 0 941
ENSMUST00000173222 Nrxn1-005 processed_transcript Mus_musculus 0 710
ENSMUST00000097270 Gm10493-201 pseudogene Mus_musculus 0 682
ENSMUST00000173917 Nrxn1-010 protein_coding Mus_musculus 0 630
ENSMUST00000161102 Nrxn1-013 retained_intron Mus_musculus 0 501
ENSMUST00000176918 Nrxn1-019 processed_transcript Mus_musculus 0 270
ENSMUST00000176118 Nrxn1-012 protein_coding Mus_musculus 0 202

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