C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine incorporator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342374 SERINC3-001 ENSG00000132824 9606 - 20:44497431-44522109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342374
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342374 50.625±0.00 23.459±0.00 5.499±0.00 33.824±10.01 28.244±14.67 36.359±0.00 15.653±8.01 18.629±6.36 17.844±0.16 27.080±8.42 21.992±17.15 25.521±11.91 56.642±19.04 48.039±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R9 CIL_0007R9_0001 VISTA 20:44272530-44874028
CIL_0002SO CIL_0002SO_0001 CGP 20:44475886-44522109
CIL_0003UY CIL_0003UY_0001 CGP 20:44496221-44624247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006658 IEA phosphatidylserine metabolic process
GO:0006665 IEA sphingolipid metabolic process
GO:0015194 IEA L-serine transmembrane transporter activity
GO:0015825 IEA L-serine transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:1902237 IEA positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119869 Gm12420-001 processed_pseudogene Mus_musculus 0 712

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