C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor A (SII), 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343484 TCEA2-001 ENSG00000171703 9606 + 20:64063144-64072346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343484 3.017±0.00 10.589±0.00 0.912±0.00 38.502±32.56 4.007±0.00 14.993±0.00 3.312±0.00 9.038±7.47 1.354±0.00 4.398±3.80 1.646±1.18 19.079±16.01 12.617±1.74 75.323±8.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V3 CIL_0003V3_0001 CGP 20:64047582-64072347
CIL_0007I6 CIL_0007I6_0001 CGP 20:64049836-64079988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005813 IDA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006354 NAS DNA-templated transcription, elongation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008023 NAS transcription elongation factor complex
GO:0008270 IEA zinc ion binding
GO:0032784 IEA:NAS regulation of DNA-templated transcription, elongation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014222 tcea2-001 protein_coding Danio_rerio 0 231

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