C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TGFB-induced factor homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343820 TGIF1-002 ENSG00000177426 9606 + 18:3449704-3458411 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343820
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343820 4.801±0.00 1.211±0.00 0.746±0.00 3.785±0.00 12.591±0.00 3.230±0.00 1.275±0.53 10.419±0.00 3.567±0.00 8.379±0.51 8.696±1.75 4.802±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007275 TAS multicellular organismal development
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059775 Tgif1-001 protein_coding Mus_musculus 0 1448
ENSMUST00000166395 Tgif1-002 protein_coding Mus_musculus 0 1258
ENSMUST00000172229 Tgif1-201 protein_coding Mus_musculus 0 1254
ENSMUST00000118283 Tgif1-003 protein_coding Mus_musculus 0 1254
ENSMUST00000186358 Tgif1-011 protein_coding Mus_musculus 0 952
ENSMUST00000127719 Tgif1-004 protein_coding Mus_musculus 0 891
ENSMUST00000135007 Tgif1-009 protein_coding Mus_musculus 0 603
ENSMUST00000156484 Tgif1-008 protein_coding Mus_musculus 0 459
ENSMUST00000132825 Tgif1-005 processed_transcript Mus_musculus 1e-25 122

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