C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TGFB-induced factor homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127719 Tgif1-004 ENSMUSG00000047407 10090 - 17:70844728-70849790 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungOvaryENSMUST00000127719
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Ovary
ENSMUST00000127719 5.076±0.38 1.906±0.00 3.580±0.55 6.937±1.60 1.574±0.00 2.728±0.44 2.455±0.00 14.619±3.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KX CIL_0006KX_0002 CGP 17:69969073-70853546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001843 IMP neural tube closure
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007368 IMP determination of left/right symmetry
GO:0008285 IMP negative regulation of cell proliferation
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010470 IGI regulation of gastrulation
GO:0038092 IGI nodal signaling pathway
GO:0045666 IDA positive regulation of neuron differentiation
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0048387 IMP negative regulation of retinoic acid receptor signaling pathway
GO:0060041 IDA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330513 TGIF1-003 protein_coding Homo_sapiens 0 891
ENST00000343820 TGIF1-002 protein_coding Homo_sapiens 0 891
ENST00000345133 TGIF1-016 protein_coding Homo_sapiens 0 889
ENST00000400167 TGIF1-201 protein_coding Homo_sapiens 0 889
ENST00000401449 TGIF1-202 protein_coding Homo_sapiens 0 891
ENST00000405385 TGIF1-203 protein_coding Homo_sapiens 0 891
ENST00000407501 TGIF1-006 protein_coding Homo_sapiens 0 891
ENST00000472042 TGIF1-004 protein_coding Homo_sapiens 0 891
ENST00000546979 TGIF1-005 protein_coding Homo_sapiens 0 442
ENST00000548489 TGIF1-204 protein_coding Homo_sapiens 0 891
ENST00000549253 TGIF1-012 protein_coding Homo_sapiens 0 407
ENST00000549468 TGIF1-018 protein_coding Homo_sapiens 0 525
ENST00000549546 TGIF1-017 protein_coding Homo_sapiens 0 893
ENST00000549780 TGIF1-011 protein_coding Homo_sapiens 0 795
ENST00000550958 TGIF1-010 protein_coding Homo_sapiens 0 516
ENST00000551333 TGIF1-019 protein_coding Homo_sapiens 0 542
ENST00000551541 TGIF1-015 protein_coding Homo_sapiens 0 894
ENST00000552383 TGIF1-008 protein_coding Homo_sapiens 0 636
ENST00000558095 TGIF1P1-001 processed_pseudogene Homo_sapiens 0 501
ENST00000577543 TGIF1-020 protein_coding Homo_sapiens 0 239
ENST00000618001 TGIF1-001 protein_coding Homo_sapiens 0 891

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