C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344293 TAF3-001 ENSG00000165632 9606 + 10:7818504-8016627 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344293 3.258±0.00 3.403±0.00 0.106±0.00 1.328±1.09 1.582±0.86 2.870±2.18 1.561±1.47 1.517±1.19 0.880±0.10 1.659±0.52 3.183±2.86 2.738±1.61 3.058±1.39 8.281±1.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002039 IEA p53 binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005669 IDA transcription factor TFIID complex
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0046982 IEA protein heterodimerization activity
GO:0051457 IDA maintenance of protein location in nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026888 Taf3-001 protein_coding Mus_musculus 0 2828
ENSMUST00000114909 Taf3-002 protein_coding Mus_musculus 0 1984
ENSMUST00000129720 Taf3-003 processed_transcript Mus_musculus 0 468
ENSMUST00000114907 Taf3-005 protein_coding Mus_musculus 0 272
ENSMUST00000114906 Taf3-004 protein_coding Mus_musculus 0 272

Loading