C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026888 Taf3-001 ENSMUSG00000025782 10090 - 2:9914552-10048596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026888 1.960±0.80 3.488±0.23 4.132±0.18 4.104±1.37 1.665±0.64 1.644±0.47 1.260±0.18 2.157±0.19 1.872±0.97 3.328±0.48 1.706±0.30 3.620±1.15 3.043±1.98 4.770±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J5 CIL_0007J5_0002 UCNEbase 2:9433268-9958392
CIL_0000WL CIL_0000WL_0002 CGP 2:9914552-10080510

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002039 IPI p53 binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISA transcription factor TFIID complex
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0051457 IEA maintenance of protein location in nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344293 TAF3-001 protein_coding Homo_sapiens 0 2828

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