C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344327 TRPC6-001 ENSG00000137672 9606 - 11:101451564-101583928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344327 0.679±0.00 0.063±0.00 0.277±0.00 0.178±0.00 0.210±0.00 0.474±0.34 0.247±0.00 0.424±0.25 0.354±0.00 3.355±2.13 0.029±0.00 0.608±0.42 1.926±0.68 0.218±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C4 CIL_0002C4_0002 CGP 11:101451564-101916522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005261 IEA cation channel activity
GO:0005262 IEA calcium channel activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006811 IEA ion transport
GO:0006812 TAS cation transport
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007411 TAS axon guidance
GO:0007568 IEA aging
GO:0007596 TAS blood coagulation
GO:0015279 IEA store-operated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030168 TAS platelet activation
GO:0032414 IDA positive regulation of ion transmembrane transporter activity
GO:0034220 TAS ion transmembrane transport
GO:0036057 IEA slit diaphragm
GO:0051928 IDA positive regulation of calcium ion transport
GO:0055085 TAS:IEA transmembrane transport
GO:0070301 IEA cellular response to hydrogen peroxide
GO:0070588 TAS calcium ion transmembrane transport
GO:0070679 IDA inositol 1,4,5 trisphosphate binding
GO:0071456 IEA cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050433 Trpc6-201 protein_coding Mus_musculus 0 3362

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