C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine racemase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344595 SRR-001 ENSG00000167720 9606 + 17:2303704-2325260 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IDA magnesium ion binding
GO:0003941 IDA L-serine ammonia-lyase activity
GO:0005509 ISS calcium ion binding
GO:0005515 IEA protein binding
GO:0005524 ISS ATP binding
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006563 IDA L-serine metabolic process
GO:0007420 IEA brain development
GO:0007568 IEA aging
GO:0008721 IEA D-serine ammonia-lyase activity
GO:0009069 ISS serine family amino acid metabolic process
GO:0014070 IEA response to organic cyclic compound
GO:0016594 ISS glycine binding
GO:0018114 ISS threonine racemase activity
GO:0030165 IPI PDZ domain binding
GO:0030170 ISS pyridoxal phosphate binding
GO:0030378 IDA serine racemase activity
GO:0032496 IEP response to lipopolysaccharide
GO:0042493 IEA response to drug
GO:0042803 IDA protein homodimerization activity
GO:0042866 IDA pyruvate biosynthetic process
GO:0043025 IDA neuronal cell body
GO:0043278 IEA response to morphine
GO:0045177 IEA apical part of cell
GO:0051289 ISS protein homotetramerization
GO:0070178 IDA D-serine metabolic process
GO:0070179 IDA D-serine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121738 Srr-002 protein_coding Mus_musculus 0 1395
ENSMUST00000065211 Srr-201 protein_coding Mus_musculus 0 1238
ENSMUST00000108448 Srr-001 protein_coding Mus_musculus 0 1230
ENSMUST00000127499 Srr-006 processed_transcript Mus_musculus 0 745
ENSMUST00000128556 Srr-005 protein_coding Mus_musculus 0 686
ENSMUST00000108447 Srr-003 protein_coding Mus_musculus 0 647
ENSMUST00000123855 Srr-004 protein_coding Mus_musculus 0 604
ENSMUST00000135587 Srr-007 retained_intron Mus_musculus 0 516
ENSMUST00000147817 Srr-008 retained_intron Mus_musculus 0 492
ENSMUST00000138612 Srr-010 protein_coding Mus_musculus 0 446
ENSMUST00000045807 Tsr1-001 protein_coding Mus_musculus 0 287
ENSMUST00000045281 Smg6-001 protein_coding Mus_musculus 3e-27 128

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