C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045281 Smg6-001 ENSMUSG00000038290 10090 + 11:74925823-75164448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045281 9.907±3.20 8.710±0.85 7.760±2.16 10.500±1.40 8.228±1.15 7.499±0.71 4.467±0.43 8.289±1.18 4.865±1.53 9.406±1.15 3.830±0.66 13.596±3.73 9.057±3.45 23.355±2.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000723 ISS telomere maintenance
GO:0000781 IEA chromosome, telomeric region
GO:0004521 ISS endoribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0035145 ISS exon-exon junction complex
GO:0042162 ISS telomeric DNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263073 SMG6-001 protein_coding Homo_sapiens 0 5603
ENST00000344595 SRR-001 protein_coding Homo_sapiens 3e-27 128
ENST00000354901 SMG6-002 protein_coding Homo_sapiens 0 2708
ENST00000536871 SMG6-005 protein_coding Homo_sapiens 0 2313
ENST00000570606 SMG6-021 protein_coding Homo_sapiens 0 492
ENST00000570659 SMG6-019 protein_coding Homo_sapiens 0 763
ENST00000570668 SMG6-013 protein_coding Homo_sapiens 0 475
ENST00000570756 SMG6-004 processed_transcript Homo_sapiens 0 1393
ENST00000570874 SMG6-011 retained_intron Homo_sapiens 0 542
ENST00000571442 SMG6-015 protein_coding Homo_sapiens 0 656
ENST00000572205 SMG6-018 protein_coding Homo_sapiens 0 564
ENST00000572369 SMG6-008 protein_coding Homo_sapiens 0 680
ENST00000573153 SMG6-012 processed_transcript Homo_sapiens 0 580
ENST00000573166 SMG6-003 processed_transcript Homo_sapiens 0 1703
ENST00000573827 SMG6-023 processed_transcript Homo_sapiens 0 699
ENST00000574501 SMG6-022 retained_intron Homo_sapiens 0 544
ENST00000575176 SMG6-009 protein_coding Homo_sapiens 0 601
ENST00000575338 SMG6-007 processed_transcript Homo_sapiens 0 379
ENST00000575454 SMG6-010 protein_coding Homo_sapiens 0 918
ENST00000575663 SMG6-014 protein_coding Homo_sapiens 0 649
ENST00000576218 SMG6-020 processed_transcript Homo_sapiens 0 1160
ENST00000619757 HIC1-006 protein_coding Homo_sapiens 0 544

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