C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras suppressor protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345264 RSU1-001 ENSG00000148484 9606 - 10:16590611-16817528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345264
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345264 12.820±0.00 11.132±0.00 1.796±0.00 3.113±0.32 7.733±3.10 7.604±3.33 2.917±1.04 5.658±3.80 4.613±2.53 5.536±0.57 3.343±0.00 7.369±4.59 9.057±3.23 4.410±3.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045Y CIL_00045Y_0002 CGP 10:16513743-16817528
CIL_00063X CIL_00063X_0002 CGP 10:16590611-17129831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0007165 TAS signal transduction
GO:0010811 IMP positive regulation of cell-substrate adhesion
GO:0034329 TAS cell junction assembly
GO:0043547 IMP positive regulation of GTPase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028059 Rsu1-001 protein_coding Mus_musculus 0 1016
ENSMUST00000114791 Rsu1-006 protein_coding Mus_musculus 0 837
ENSMUST00000161912 Rsu1-007 nonsense_mediated_decay Mus_musculus 0 745
ENSMUST00000162223 Rsu1-008 retained_intron Mus_musculus 0 721
ENSMUST00000134551 Rsu1-002 nonsense_mediated_decay Mus_musculus 0 542
ENSMUST00000131226 Rsu1-003 retained_intron Mus_musculus 0 422

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