C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 9, regulatory
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346786 MYL9-002 ENSG00000101335 9606 + 20:36541497-36549825 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346786 295.052±0.00 541.076±0.00 5.775±0.00 15.081±13.53 224.015±195.22 1194.302±1135.63 314.053±287.71 61.257±57.77 90.893±66.22 317.224±304.61 90.643±84.56 261.384±275.59 184.354±67.23 416.261±363.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Q CIL_00056Q_0001 CGP 20:36306336-36551447
CIL_0006RT CIL_0006RT_0002 CGP 20:36541484-36593950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0005859 TAS muscle myosin complex
GO:0006936 TAS muscle contraction
GO:0006937 TAS regulation of muscle contraction
GO:0007411 TAS axon guidance
GO:0008307 TAS structural constituent of muscle
GO:0070527 IMP platelet aggregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131622 Myl9-004 processed_transcript Mus_musculus 0 510
ENSMUST00000088552 Myl9-001 protein_coding Mus_musculus 0 283
ENSMUST00000132985 Myl9-002 processed_transcript Mus_musculus 0 272
ENSMUST00000129093 Myl12a-007 retained_intron Mus_musculus 0 228
ENSMUST00000126529 Myl12a-002 retained_intron Mus_musculus 0 228
ENSMUST00000121056 Gm6517-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000150456 Myl12a-004 protein_coding Mus_musculus 0 226
ENSMUST00000123686 Myl12a-003 protein_coding Mus_musculus 0 226
ENSMUST00000024846 Myl12a-006 protein_coding Mus_musculus 0 226
ENSMUST00000148960 Myl12a-001 protein_coding Mus_musculus 0 226
ENSMUST00000131820 Myl12b-002 retained_intron Mus_musculus 0 226
ENSMUST00000128179 Myl12a-005 protein_coding Mus_musculus 0 224
ENSMUST00000038446 Myl12b-001 protein_coding Mus_musculus 0 224
ENSDART00000037750 myl12.1-201 protein_coding Danio_rerio 8e-34 148

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