C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006RT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000008030-ENSDARG00000088703 CGP 7955 6:1700376-1725682
GeneTranscriptPositionBiotype
ENSDARG00000008030 (myl9b)
myosin, light chain 9b, regulatory 		ENSDART00000113505 (myl9b-201) 1700376-1712425 protein_coding
ENSDARG00000088703 (TGIF2)
TGFB-induced factor homeobox 2 		ENSDART00000124124 (TGIF2-201) 1721453-1725682 protein_coding
CIL_0006RT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101335-ENSG00000118707 CGP 9606 20:36541484-36593950
GeneTranscriptPositionBiotype
ENSG00000101335 (MYL9)
myosin, light chain 9, regulatory 		ENST00000279022 (MYL9-001) 36541484-36551447 protein_coding
ENST00000346786 (MYL9-002) 36541497-36549825 protein_coding
ENSG00000118707 (TGIF2)
TGFB-induced factor homeobox 2 		ENST00000373872 (TGIF2-001) 36573607-36593950 protein_coding
ENST00000373874 (TGIF2-002) 36573488-36593950 protein_coding
ENST00000557885 (TGIF2-006) 36578827-36591923 protein_coding
ENST00000558028 (TGIF2-004) 36574554-36591239 protein_coding
ENST00000558465 (TGIF2-007) 36578925-36592298 protein_coding
ENST00000560025 (TGIF2-003) 36574672-36591429 protein_coding
ENST00000561398 (TGIF2-005) 36578807-36592141 protein_coding
ENST00000611732 (TGIF2-201) 36574554-36593945 protein_coding
ENSG00000259399 (TGIF2-C20orf24)
TGIF2-C20orf24 readthrough 		ENST00000558530 (TGIF2-C20orf24-001) 36574553-36612384 protein_coding
ENSG00000273986 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000615037 (Metazoa_SRP.1-259) 36561237-36561530 misc_RNA
CIL_0006RT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067818-ENSMUSG00000062175 CGP 10090 2:156775420-156855570
GeneTranscriptPositionBiotype
ENSMUSG00000062175 (Tgif2)
TGFB-induced factor homeobox 2 		ENSMUST00000073352 (Tgif2-002) 156840100-156855570 protein_coding
ENSMUST00000081335 (Tgif2-001) 156840007-156855570 protein_coding
ENSMUST00000150078 (Tgif2-003) 156841022-156847674 nonsense_mediated_decay
ENSMUST00000175634 (Tgif2-005) 156849956-156853193 processed_transcript
ENSMUST00000176281 (Tgif2-006) 156850836-156853547 processed_transcript
ENSMUSG00000067818 (Myl9)
myosin, light polypeptide 9, regulatory 		ENSMUST00000088552 (Myl9-001) 156775420-156781658 protein_coding
ENSMUST00000131622 (Myl9-004) 156778517-156781164 processed_transcript
ENSMUST00000132985 (Myl9-002) 156775457-156780534 processed_transcript
ENSMUST00000145299 (Myl9-003) 156775454-156781361 processed_transcript
ENSMUSG00000082196 (Gm14231)
predicted gene 14231 		ENSMUST00000120090 (Gm14231-001) 156789812-156790403 processed_pseudogene
ENSMUSG00000085741 (5430405H02Rik)
RIKEN cDNA 5430405H02 gene 		ENSMUST00000153616 (5430405H02Rik-001) 156852430-156862894 antisense
ENSMUST00000176134 (5430405H02Rik-002) 156852430-156862945 antisense
ENSMUST00000185402 (5430405H02Rik-004) 156844351-156862963 antisense
ENSMUST00000187327 (5430405H02Rik-003) 156854116-156856116 retained_intron
ENSMUSG00000087179 (Gm14230)
predicted gene 14230 		ENSMUST00000134838 (Gm14230-003) 156838472-156839800 lincRNA
ENSMUST00000137463 (Gm14230-001) 156833049-156839820 lincRNA
ENSMUST00000149275 (Gm14230-002) 156837822-156839892 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RT_0001ENSDARG00000008030ENSDART00000113505ENSDARG00000088703ENSDART00000124124CIL_0006RT_0002ENSG00000101335ENST00000279022ENST00000346786ENSG00000118707ENST00000373872ENST00000373874ENST00000557885ENST00000558028ENST00000558465ENST00000560025ENST00000561398ENST00000611732ENSG00000259399ENST00000558530ENSG00000273986ENST00000615037CIL_0006RT_0003ENSMUSG00000062175ENSMUST00000073352ENSMUST00000081335ENSMUST00000150078ENSMUST00000175634ENSMUST00000176281ENSMUSG00000067818ENSMUST00000088552ENSMUST00000131622ENSMUST00000132985ENSMUST00000145299ENSMUSG00000082196ENSMUST00000120090ENSMUSG00000085741ENSMUST00000153616ENSMUST00000176134ENSMUST00000185402ENSMUST00000187327ENSMUSG00000087179ENSMUST00000134838ENSMUST00000137463ENSMUST00000149275
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RT_0001ENSDARG00000008030ENSDART00000113505ENSDARG00000088703ENSDART00000124124CIL_0006RT_0002ENSG00000101335ENST00000279022ENST00000346786ENSG00000118707ENST00000373872ENST00000373874ENST00000558465ENST00000560025ENST00000611732ENSG00000259399ENST00000558530ENSG00000273986ENST00000615037CIL_0006RT_0003ENSMUSG00000062175ENSMUST00000073352ENSMUST00000081335ENSMUSG00000067818ENSMUST00000088552ENSMUST00000132985ENSMUST00000145299ENSMUSG00000082196ENSMUST00000120090ENSMUSG00000085741ENSMUST00000153616ENSMUST00000176134ENSMUST00000185402ENSMUST00000187327ENSMUSG00000087179ENSMUST00000134838ENSMUST00000137463ENSMUST00000149275
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008030 ENSDART00000113505 N/A N/A N/A 12.079±2.07 N/A N/A 330.976±174.10 28.896±7.95 3.117±0.00 N/A 27.558±0.00 N/A N/A N/A
ENSDARG00000088703 ENSDART00000124124 N/A N/A N/A 1.103±0.00 N/A N/A 0.062±0.00 N/A 0.103±0.00 N/A 0.081±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101335 ENST00000279022 65.103±0.00 122.600±0.00 1.261±0.00 3.943±3.58 44.154±34.77 262.442±248.94 43.455±34.38 13.564±13.27 29.397±25.88 40.623±37.92 9.734±9.43 89.233±87.04 40.473±26.36 94.011±82.87
ENST00000346786 295.052±0.00 541.076±0.00 5.775±0.00 15.081±13.53 224.015±195.22 1194.302±1135.63 314.053±287.71 61.257±57.77 90.893±66.22 317.224±304.61 90.643±84.56 261.384±275.59 184.354±67.23 416.261±363.88
ENSG00000118707 ENST00000373872 4.771±0.00 9.077±0.00 N/A N/A 4.282±1.82 3.053±0.00 2.509±0.00 3.866±0.00 N/A 5.297±2.76 N/A 8.776±3.75 4.569±1.87 5.759±2.15
ENST00000373874 2.178±0.00 N/A N/A 0.560±0.00 N/A N/A 0.355±0.00 0.911±0.00 N/A N/A N/A N/A N/A 5.101±0.00
ENST00000557885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558465 N/A N/A 1.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560025 N/A N/A N/A N/A N/A N/A N/A 1.519±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611732 N/A N/A 0.832±0.00 N/A N/A N/A N/A N/A 1.851±0.00 N/A 0.575±0.00 2.299±0.00 4.266±0.00 2.553±0.00
ENSG00000259399 ENST00000558530 15.064±0.00 28.644±0.00 N/A 12.005±0.00 33.607±0.00 18.689±0.00 16.232±0.00 24.624±0.00 55.151±0.00 23.344±0.00 20.933±0.00 N/A N/A 41.472±0.00
ENSG00000273986 ENST00000615037 1.295±0.00 2.911±0.00 N/A 0.603±0.00 1.284±0.00 0.423±0.00 0.253±0.00 0.621±0.00 0.430±0.00 2.649±0.00 0.595±0.00 0.292±0.00 N/A 0.816±0.67
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000062175 ENSMUST00000073352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.193±0.00 N/A
ENSMUST00000081335 2.888±0.35 0.711±0.00 N/A 2.302±0.67 1.287±0.30 0.656±0.15 N/A 0.470±0.01 0.385±0.27 0.983±0.18 N/A 3.947±1.03 1.381±0.21 1.123±0.14
ENSMUST00000150078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067818 ENSMUST00000088552 210.395±143.44 13.289±1.32 1996.555±319.61 7.333±1.47 32.975±3.37 391.776±21.34 52.942±12.47 47.844±2.49 11.770±9.90 70.809±7.95 23.994±2.16 304.078±61.49 55.385±58.55 26.991±11.45
ENSMUST00000131622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132985 N/A N/A N/A 6.667±0.00 N/A N/A N/A N/A N/A N/A N/A 107.296±0.00 18.418±12.06 11.740±0.00
ENSMUST00000145299 N/A 4.861±0.79 N/A 3.662±0.00 11.565±1.67 116.208±0.00 N/A N/A 0.626±0.20 N/A N/A N/A N/A N/A
ENSMUSG00000082196 ENSMUST00000120090 N/A N/A 0.052±0.00 0.035±0.02 N/A N/A N/A 0.078±0.00 0.035±0.02 N/A 0.079±0.00 0.207±0.05 0.181±0.21 N/A
ENSMUSG00000085741 ENSMUST00000153616 6.212±0.00 N/A 2.536±0.20 10.991±0.13 2.562±0.00 N/A 0.572±0.00 N/A 3.570±0.61 N/A 0.321±0.00 4.923±1.05 6.648±2.45 1.972±0.54
ENSMUST00000176134 2.281±0.13 4.082±0.49 2.937±0.72 N/A 2.950±0.58 2.147±0.30 0.728±0.00 2.120±0.13 1.106±0.64 2.885±0.28 0.463±0.12 7.048±1.48 N/A 2.624±0.18
ENSMUST00000185402 N/A N/A N/A N/A N/A 2.990±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187327 9.596±1.58 N/A 3.749±0.08 12.404±0.75 3.187±1.49 1.445±0.16 0.504±0.02 1.595±0.12 2.806±2.05 2.251±0.32 0.218±0.11 7.069±2.27 8.782±5.01 3.552±1.28
ENSMUSG00000087179 ENSMUST00000134838 N/A 0.701±0.00 N/A 0.603±0.00 0.461±0.18 0.197±0.00 0.132±0.00 0.381±0.05 1.096±0.00 N/A N/A 1.994±0.70 N/A N/A
ENSMUST00000137463 2.015±1.65 0.475±0.18 0.653±0.10 1.401±0.00 0.349±0.17 0.180±0.07 0.204±0.06 0.517±0.12 1.368±1.16 0.616±0.10 0.099±0.03 2.131±0.78 N/A 0.117±0.00
ENSMUST00000149275 1.327±1.09 1.444±0.53 0.340±0.02 0.933±0.00 0.757±0.22 0.567±0.34 N/A 0.711±0.28 0.753±0.67 1.101±0.04 0.289±0.00 4.527±1.70 N/A N/A

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