C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thrombospondin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350881 THBS4-001 ENSG00000113296 9606 + 5:80035348-80083287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350881
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350881 7.649±0.00 7.344±0.00 8.293±0.00 20.261±10.93 16.320±13.76 15.458±11.43 0.231±0.00 1.105±0.00 1.005±0.22 14.582±2.64 5.904±4.73 0.188±0.07 9.532±6.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TF CIL_0005TF_0002 CGP 5:79976731-80083287
CIL_0005TG CIL_0005TG_0002 CGP 5:79991311-80256079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001938 IDA positive regulation of endothelial cell proliferation
GO:0005178 IDA integrin binding
GO:0005509 IEA:IDA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS:IEA extracellular region
GO:0005604 IDA basement membrane
GO:0005615 IDA extracellular space
GO:0005783 ISS endoplasmic reticulum
GO:0006986 IEA response to unfolded protein
GO:0007155 IEA cell adhesion
GO:0008083 IEA growth factor activity
GO:0008201 IDA heparin binding
GO:0016525 IEP negative regulation of angiogenesis
GO:0016529 ISS sarcoplasmic reticulum
GO:0031012 ISS extracellular matrix
GO:0034103 ISS regulation of tissue remodeling
GO:0034976 ISS response to endoplasmic reticulum stress
GO:0048266 ISS behavioral response to pain
GO:0048771 IEA tissue remodeling
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0051451 IDA myoblast migration
GO:0051781 IEA positive regulation of cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0071603 IDA endothelial cell-cell adhesion
GO:0090023 IDA positive regulation of neutrophil chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022213 Thbs4-001 protein_coding Mus_musculus 0 3347

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