C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pescadillo ribosomal biogenesis factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354694 PES1-001 ENSG00000100029 9606 - 22:30576625-30591940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000354694
Transcript ID Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000354694 2.456±0.00 4.273±2.57 4.019±0.00 2.906±0.00 3.437±0.43 13.720±0.00 19.345±13.88 16.858±7.99 9.969±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 IMP maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 IMP maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000793 IEA condensed chromosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA:IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006364 IMP rRNA processing
GO:0007000 IEA nucleolus organization
GO:0008283 NAS cell proliferation
GO:0016020 IDA membrane
GO:0030687 IDA preribosome, large subunit precursor
GO:0033365 IEA protein localization to organelle
GO:0042254 IEA ribosome biogenesis
GO:0042273 IC ribosomal large subunit biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:0051726 IMP regulation of cell cycle
GO:0070545 IDA PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020705 Pes1-201 protein_coding Mus_musculus 0 1818
ENSMUST00000109985 Pes1-001 protein_coding Mus_musculus 0 1762
ENSMUST00000178604 Gm5472-201 processed_pseudogene Mus_musculus 0 1312
ENSMUST00000137544 Pes1-002 processed_transcript Mus_musculus 0 579
ENSMUST00000042344 4930556J24Rik-001 protein_coding Mus_musculus 7e-38 163

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