C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: occludin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355237 OCLN-001 ENSG00000197822 9606 + 5:69492292-69558104 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000355237
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000355237 0.178±0.00 0.094±0.00 0.267±0.08 0.473±0.25 1.783±0.33 0.622±0.00 3.749±2.06 1.634±0.85 0.587±0.30 0.288±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000774 CIL_000774_0002 CGP 5:69415112-69558104
CIL_0005K7 CIL_0005K7_0002 CGP 5:69492292-69594723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005923 IDA:IEA tight junction
GO:0006461 TAS protein complex assembly
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0008119 IEA thiopurine S-methyltransferase activity
GO:0008757 IEA S-adenosylmethionine-dependent methyltransferase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0016327 IEA apicolateral plasma membrane
GO:0019904 IPI protein domain specific binding
GO:0030054 IDA cell junction
GO:0030139 IEA endocytic vesicle
GO:0031410 IDA cytoplasmic vesicle
GO:0032259 IEA methylation
GO:0045216 IMP cell-cell junction organization
GO:0046498 IEA S-adenosylhomocysteine metabolic process
GO:0046500 IEA S-adenosylmethionine metabolic process
GO:0070830 IMP tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022140 Ocln-003 protein_coding Mus_musculus 0 1851
ENSMUST00000160859 Ocln-002 protein_coding Mus_musculus 0 1821
ENSMUST00000069756 Ocln-001 protein_coding Mus_musculus 0 1821
ENSMUST00000159459 Ocln-004 protein_coding Mus_musculus 0 1031
ENSMUST00000159515 Ocln-005 protein_coding Mus_musculus 0 420

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