C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: occludin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160859 Ocln-002 ENSMUSG00000021638 10090 - 13:100498114-100552481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160859 0.401±0.34 0.251±0.00 1.406±0.16 1.266±0.00 1.233±0.79 4.536±1.02 0.131±0.03 1.715±0.23 0.953±0.15 3.934±1.27 0.039±0.00 1.502±0.82 1.101±0.61 0.643±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SX CIL_0001SX_0002 CGP 13:100496507-100616971

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005923 IDA tight junction
GO:0009986 ISO cell surface
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0016327 IDA apicolateral plasma membrane
GO:0030139 IDA endocytic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355237 OCLN-001 protein_coding Homo_sapiens 0 1821
ENST00000396442 OCLN-002 protein_coding Homo_sapiens 0 1711
ENST00000445744 RP11-195E2.1-001 unprocessed_pseudogene Homo_sapiens 0 702
ENST00000510666 OCLN-004 retained_intron Homo_sapiens 0 531
ENST00000514370 OCLN-003 processed_transcript Homo_sapiens 0 640
ENST00000538151 OCLN-201 protein_coding Homo_sapiens 0 1027
ENST00000613193 OCLN-003 nonsense_mediated_decay Homo_sapiens 0 922
ENST00000615870 OCLN-001 protein_coding Homo_sapiens 0 1803
ENST00000617110 OCLN-002 protein_coding Homo_sapiens 0 1705
ENST00000617792 RP11-1275J23.3-001 unprocessed_pseudogene Homo_sapiens 0 701
ENST00000620655 OCLN-202 protein_coding Homo_sapiens 0 1707
ENST00000622858 OCLN-004 processed_transcript Homo_sapiens 0 621
ENST00000623499 OCLN-005 retained_intron Homo_sapiens 0 525

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